No Detail Found!

Genome Based Research in Aquaculture

Author(s)
SOMIA LIAQA Department of Zoology, University of Gujrat, Gujrat, Punjab, Pakistan
MUBASHAR HUSSAIN Department of Zoology, University of Gujrat, Gujrat, Punjab, Pakistan
MUHAMMAD FAHEEM MALIK Department of Zoology, University of Gujrat, Gujrat, Punjab, Pakistan
ASIFA ASLAM Department of Zoology, University of Gujrat, Gujrat, Punjab, Pakistan
Abstract
Genome -based technologies are being instigated to manipulate the structure and function of the genome and to identify the genes of interest for genetic modification of economically important species. Genome editing technologies have also been designed for genetic manipulation of aquaculture species to increase production and quality with minimum investment costs. DNA marker technologies are the most widely used genome technologies. DNA fingerprints are used to construct physical maps while genetic maps are based upon meiotic recombination. BAC fingerprinting is the commonly used method for physical mapping. Next- generation sequencers revolutionized science and allowed the de-novo whole genome sequencing. QTL mapping has made it possible to identify the genes responsible for a particular trait. Government involvement and better training of aqualturists are direly needed to reinforce the practical implications of genome- based technologies.
Publication Details
Page(s) 54-74
Published Journal: Journal of Bioresource Management, Volume: 8, Issue: 1, Year: 2021

Request the full text from PASTIC

Keywords
microsatellite markers, genome editing, QTL mapping, BAC finger printing, SNPs.
References
Arai K .2001 .Genetic improvement of aquaculture finfish species by chromosome manipulation techniques in Japan. , 197(1-4) : 205-228.
Avise JC .1995 .Mitochondrial DNA polymorphism and a connection between genetics and demography of relevance to conservation. Conserv Biol, 9(3) : 686-690.
Baerwald M,Petersen J,Hedrick R,Schisler G,May B .2011 .A major effect quantitative trait locus for whirling disease resistance identified in rainbow trout (Oncorhynchus mykiss). Heredity., 106(6) : 920-926.
Baranski M,Gopikrishna G,Robinson NA,Katneni VK,Shekhar MS,Shanmugakarthik J,Jothivel S,Gopal C,Ravichandran P,Kent M,Arnyasi M,Ponniah AG M .2014 .The development of a high density linkage map for black tiger shrimp (Penaeus monodon) based on cSNPs. PLoS One, 9(1) : e85413.
Bibikova M,Golic M,Golic KG,Carroll D KG .2002 .Targeted chromosomal cleavage and mutagenesis in Drosophila using zinc-finger nucleases. , 161(3) : 1169-1175.
Billington N .2003 .Population genetics: principles and applications for fisheries scientists. Am Fish Soc Bethesda, : 59-100.
Boch J,Scholze H,Schornack S,Landgraf A,Hahn S,Kay S,Lahaye T,Nickstadt A,Bonas U .2009 .Breaking the code of DNA binding specificity of TAL-type III effectors. , 326(5959) : 1509-1512.
Boney SE,Shelton WL,Yang SL,Wilken L SL .1984 .Sex reversal and breeding of grass carp. Trans Am Fish Soc., 113(3) : 348-353.
Botstein D,White RL,Skolnick M,Davis RW M .1980 .Construction of a genetic linkage map in man using restriction fragment length polymorphisms. Am J Hum Genet, 32(3) : 314.
Boulding E,Culling M,Glebe B,Berg P,Lien S,Moen T .2008 .Conservation genomics of Atlantic salmon: SNPs associated with QTLs for adaptive traits in parr from four trans-Atlantic backcrosses. , 101(4) : 381-391.
Boulton K,Massault C,Houston RD,de Koning DJ,Haley CS,Bovenhuis H,Batargias C,Canario VM,Kotoulas G,Tsigenopoulosg CS .2011 .QTL affecting morphometric traits and stress response in the gilthead seabream (Sparus aurata). Aquaculture., 319(1-2) : 58-66.
Brem G,Brenig B,Hörstgen-Schwark G,Winnacker EL .1988 .Gene transfer in tilapia (Oreochromis niloticus). Aquaculture., 68(3) : 209-219.
Carvalho GR .2004 .Population genetics: Principles and applications for fisheries scientists. Fish and Fisheries., 5(1) : 94-95.
Castaño-Sánchez C,Fuji K,Ozaki A,Hasegawa O,Sakamoto T,Morishima K,Nakayama I,Fujiwara A,Masaoka T,Okamoto H,Hayashida K,Tagami M,Kawai J,Hayashizaki Y,Okamoto N Y .2010 .A second generation genetic linkage map of Japanese flounder (Paralichthys olivaceus). BMC Genomics, 11(1) : 554.
Chapman RW .1989 .Mitochondrial and nuclear gene dynamics of introduced populations of Lepomis macrochirus. , 123(2) : 399-404.
Chistiakov DA,Hellemans B,Haley CS,Law AS,Tsigenopoulos CS,Kotoulas G,Bertotto D,Libertini A,Volkaert F A .2005 .A microsatellite linkage map of the European sea bass Dicentrarchus labrax L. Genetics. , 170(4) : 1821-1826.
Chourrout D .1980 .Thermal induction of diploid gynogenesis and triploidy in the eggs of the rainbow trout (Salmo gairdneri Richardson). Reproduction Nutrition Développement, 20 : 727-733.
Chourrout D,Chevassus B,Krieg F,Happe A,Burger G,Renard P .1986 .Production of second generation triploid and tetraploid rainbow trout by mating tetraploid males and diploid femalespotential of tetraploid fish. Theor Appl Genet, 72(2) : 193-206.
Cnaani A,Lee BY,Ozouf-Costaz C,Bonillo C,Baroiller JF,D'Cotta H and Kocher T JF .2007 .Mapping of sox2 and sox14 in tilapia (Oreochromis spp. Sexual Development, 1(3) : 207-210.
Colihueque N,Cárdenas R,Ramírez L,Estay F,Araneda F .2010 .Analysis of the association between spawning time QTL markers and the biannual spawning behavior in rainbow trout (Oncorhynchus mykiss). Genet Mol Biol, 33(3) : 578-582.
Crespi BJ,Fulton MJ BJ .2004 .Molecular systematics of Salmonidae: combined nuclear data yields a robust phylogeny. Mol Phylogenet Evol, 31(2) : 658-679.
Dawnay N,Ogden R,McEwing R,Carvalho GR,Thorpe RS .2007 .Validation of the barcoding gene COI for use in forensic genetic species identification. Forensic Sci Int., 173(1) : 1-6.
Ding Y,Johnson M,Chen W,Wong D,Chen Y,Benson S,Lam JY,Kim YM,Shizuya H YM .2001 .Fivecolor-based high-informationcontent fingerprinting of bacterial artificial chromosome clones using type IIS restriction endonucleases. , 74(2) : 142-154.
Donaldson EM,Hunter GA .1982 .Sex control in fish with particular reference to salmonids. Can J Fish Aquat Sci., 39(1) : 99-110.
Dunham R .1990 .Production and use of monosex or sterile fishes in aquaculture. Rev Aquat Sci., 2(1) : 1-17.
Dunham R .2004 .'Aquaculture and fisheries biotechnology: Genetic approaches. Departement of Fisheries and Allied Aquacultures'. CABI Publishing. Alabama, : .
Dunham RA .2011 .Aquaculture and fisheries biotechnology: genetic approaches. , : .
Dunham RA,Eash J,Askins J,Townes TM .1987 .Transfer of the metallothionein-human growth hormone fusion gene into channel catfish. Trans Am Fish Soc., 116(1) : 87-91.
Easton A,Moghadam H,Danzmann R,Ferguson M .2011 .The genetic architecture of embryonic developmental rate and genetic covariation with age at maturation in rainbow trout Oncorhynchus mykiss. J Fish Biol, 78(2) : 602-623.
Edwards YJ,Elgar G,Clark MS,Bishop MJ MS .1998 .The identification and characterization of microsatellites in the compact genome of the Japanese pufferfish, Fugu rubripes: perspectives in functional and comparative genomic analyses. J Mol Biol, 278(4) : 843-854.
Garber AF,Sullivan CV .2006 .Selective breeding for the hybrid striped bass (Morone chrysops, Rafinesque× M. saxatilis, Walbaum) industry: status and perspectives. Aquacult Res., 37(4) : 319-338.
Geng X,Sha J,Liu S,Bao L,Zhang J,Wang R,Yao J,Li C,Feng J,Sun F,Sun L F .2015 .A genomewide association study in catfish reveals the presence of functional hubs of related genes within QTLs for columnaris disease resistance. BMC Genomics, 16(1) : 196.
Gharbi K,Gautier A,Danzmann RG,Gharbi S,Sakamoto T,Høyheim B,Taggart JB,Cairney M,Powell R,Krieg F,Okamoto N F .2006 .A linkage map for brown trout (Salmo trutta): chromosome homeologies and comparative genome organization with other salmonid fish. , 172(4) : 2405-2419.
Gheyas A,Haley C,Guy D,Hamilton A,Tinch A,Mota‐Velasco J,Woolliams J .2010 .Effect of a major QTL affecting IPN resistance on production traits in Atlantic salmon. Anim Genet, 41(6) : 666-668.
Gjedrem T,Baranski M .2010 .Selective breeding in aquaculture: an introduction. , : .
Gjedrem T,Robinson N T .2014 .Advances by selective breeding for aquatic species: a review. Agric Sci., 5(12) : 1152.
Gross ML,Schneider JF,Moav N,Moav B,Alvarez C,Myster SH,Liu Z,Hallerman EM,Hackett PB,Guise KS,Faras AJ .1992 .Molecular analysis and growth evaluation of northern pike (Esox Iucius) microinjected with growth hormone genes. Aquaculture, 103(3-4) : 253-273.
Guo X,Li Q,Wang QZ,Kong LF .2012 .Genetic mapping and QTL analysis of growth-related traits in the Pacific oyster. Mar Biotechnol, 14(2) : 218-226.
Gutierrez AP,Houston RD .2017 .Quantitative trait locus mapping in aquaculture species: principles and practice. Bioinformatics in Aquaculture: Principles and Methods., : 392-414.
Gutierrez AP,Lubieniecki KP,Fukui S,Withler RE,Swift B,Davidson WS B .2014 .Detection of quantitative trait loci (QTL) related to grilsing and late sexual maturation in Atlantic salmon (Salmo salar). Mar Biotechnol, 16(1) : 103-110.
Guyomard R,Boussaha M,Krieg F,Hervet C,Quillet E .2012 .A synthetic rainbow trout linkage map provides new insights into the salmonid whole genome duplication and the conservation of synteny among teleosts. BMC Genetics, 13(1) : 15.
Guyon R,Senger F,Rakotomanga M,Sadequi N,Volckaert FA,Hitte C,Galibert F C .2010 .A radiation hybrid map of the European sea bass (Dicentrarchus labrax) based on 1581 markers: Synteny analysis with model fish genomes. , 96(4) : 228-238.
Hardman M. .2005 .The phylogenetic relationships among nondiplomystid catfishes as inferred from mitochondrial cytochrome b sequences; the search for the ictalurid sister taxon (Otophysi: Siluriformes). Mol Phylogenet Evol, 37(3) : 700-720.
Heather JM,Chain B JM .2016 .The sequence of sequencers: The history of sequencing DNA. , 107(1) : 1-8.
Hebert PD,Cywinska A,Ball SL,Dewaard JR .2003 .Biological identifications through DNA barcodes. Proc R Soc London Ser B: Biol Sci., 270(1512) : 313-321.
Hedgecock D,Shin G,Gracey AY,Van Den AY,Samanta MP AY .2015 .Second-generation linkage maps for the pacific oyster Crassostrea gigas reveal errors in assembly of genome scaffolds. G3: Genes, 5(10) : 2007-2019.
Hou R,Bao Z,Wang S,Su H,Li Y,Du H,Hu J,Wang S,Hu X .2011 .PloS one. , 6(6) : e21560.
Hunter RL,Markert C .1957 .Histochemical demonstration of enzymes separated by zone electrophoresis in starch gels. Science., 125(3261) : 1294-1295.
Inoue K,Yamashita S,Hata JI,Kabeno S,Asada S,Nagahisa E,Fujita T .1990 .Electroporation as a new technique for producing transgenic fish. Cell Differ Dev., 29(2) : 123-128.
Jao LE,Wente SR,Chen W .2013 .Efficient multiplex biallelic zebrafish genome editing using a CRISPR nuclease system. Proc Nat Acad Sci., 110(34) : 13904-13909.
Jones DB,Jerry DR,Forêt S,Konovalov DA,Zenger KR .2013 .Genome-wide SNP validation and mantle tissue transcriptome analysis in the silver-lipped pearl oyster, Pinctada maxima. Mar Biotechnol, 15(6) : 647-658.
Katagiri T,Kidd C,Tomasino E,Davis JT,Wishon C,Stern JE,Charleton KL,Howe AE,Kocher TD .2005 .A BAC-based physical map of the Nile tilapia genome. BMC Genomics, 6(1) : 89.
Kim YG,Cha J,Chandrasegaran S J .1996 .Hybrid restriction enzymes: zinc finger fusions to Fok I cleavage domain. Proc Nat Acad Sci., 93(3) : 1156-1160.
Kobayashi T,Ide A,Hiasa T,Fushiki S,Ueno K S .1994 .Production of cloned amago salmon Oncorhynchus rhodurus. Fish Sci., 60(3) : 275-281.
Kucuktas H and Liu Z .2007 .Aquacult Genome Technol. , 73 : .
Küttner E,Moghadam HK,Skúlason S,Danzmann RG,Ferguson MM .2011 .Genetic architecture of body weight, condition factor and age of sexual maturation in Icelandic Arctic charr (Salvelinus alpinus). Mol Genet, 286(1) : 67-79.
Laghari MY,Lashari P,Zhang X,Xu P,Narejo NT,Liu Y,Mehboob S,AlGhanim K,Zhang Y,Sun X Y .2014 .Mapping QTLs for swimming ability related traits in Cyprinus carpio L. Mar Biotechnol. , 16(6) : 629-637.
Le Bras Y,Dechamp N,Krieg F,Filangi O,Guyomard R,Boussaha M,Bovenhuis H,Pottinger TG,Prunet P,Le Roy P and Quillet E .2011 .Detection of QTL with effects on osmoregulation capacities in the rainbow trout (Oncorhynchus mykiss). BMC Genetics, 12(1) : 46.
Leder E,Danzmann R,Ferguson M .2006 .The candidate gene, Clock, localizes to a strong spawning time quantitative trait locus region in rainbow trout. Journal of Heredity, 97(1) : 74-80.
Lee BY,Lee WJ,Streelman JT,Carleton KL,Howe AE,Hulata G,Slettan A,Stern JE,Terai Y,Kocher TD Y .2005 .A second-generation genetic linkage map of tilapia (Oreochromis spp). Genetics., 170(1) : 237-244.
Li C,Feng W,Qiu L,Xia C,Su X,Jin C,Zhou T,Zheng Y,Li T Y .2012 .Characterization of skin ulceration syndrome associated microRNAs in sea cucumber Apostichopus japonicus by deep sequencing. Fish Shellfish Immunol, 33(2) : 436-441.
Li Y,Liu S,Qin Z,Waldbieser G,Wang R,Sun L,Bao L,Danzmann RG,Dunham R .2015 .Construction of a high-density, high-resolution genetic map and its integration with BAC-based physical map in channel catfish. DNA Research, 22(1) : 39-52.
Liao X,Cheng L,Xu P,Lu G,Wachholtz M,Sun X,Chen S X .2013 .Transcriptome analysis of crucian carp (Carassius auratus), an important aquaculture and hypoxiatolerant species. PloS one., 8(4) : e62308.
Lien S,Gidskehaug L,Moen T,Hayes BJ,Berg PR,Davidson WS,Omholt SW,Kent MP .2011 .A dense SNP-based linkage map for Atlantic salmon (Salmo salar) reveals extended chromosome homeologies and striking differences in sex-specific recombination patterns. BMC Genomics, 12(1) : 1-10.
Liu S,Zhou Z,Lu J,Sun F,Wang S,Liu H,Jiang Y,Kucuktas H,Kaltenboeck L,Peatman E .2011 .Generation of genomescale gene-associated SNPs in catfish for the construction of a high-density SNP array. BMC Genomics, 12(1) : 53.
Liu X,Liu X and Zhang G .2007 .Identification of quantitative trait loci for growth‐related traits in the Pacific abalone Haliotis discus hannai Ino. Aquacult Res., 38(8) : 789-797.
Liu Z,Nichols A,Li P,Dunham R .1998 .General Genetics MGG. , 258(3) : 260-268.
Liu ZJ,Cordes J .2004 .DNA marker technologies and their applications in aquaculture genetics. Aquaculture., 238(1-4) : 1-37.
Lou Y,Purdom C Y .1984 .Polyploidy induced by hydrostatic pressure in rainbow trout, Salmo gairdneri Richardson. J Fish Biol, 25(3) : 345-351.
Loukovitis D,Sarropoulou E,Tsigenopoulos CS,Batargias C,Magoulas A,Apostolidis AP,Chatziplis D,Kotoulas G .2011 .Quantitative trait loci involved in sex determination and body growth in the gilthead sea bream (Sparus aurata L.) through targeted genome scan. PLoS One, 6(1) : e16599.
Louro B,Kuhl H,Tine M,de Koning DJ,Batargias C,Volckaert FA,Reinhardt R .2016 .Characterization and refinement of growth related quantitative trait loci in European sea bass (Dicentrarchus labrax) using a comparative approach. , 455 : 8-21.
Luo MC,Thomas C,You FM,Hsiao J,Ouyang S,Buell CR,Malandro M,McGuire PE,Anderson OD,Dvorak J .2003 .High-throughput fingerprinting of bacterial artificial chromosomes using the snapshot labeling kit and sizing of restriction fragments by capillary electrophoresis. , 82(3) : 378-389.
Massault C,Franch R,Haley C,De Koning D,Bovenhuis H,Pellizzari C,Patarnello T,Bargenolli L T .2011 .Quantitative trait loci for resistance to fish pasteurellosis in gilthead sea bream (Sparus aurata). Anim Genetics, 42(2) : 191-203.
McClelland EA,Naish K EA .2010 .Quantitative trait locus analysis of hatch timing, weight, length and growth rate in coho salmon, Oncorhynchus kisutch. , 105(6) : 562-573.
Merker R and Woodruff R .1996 .Molecular evidence for divergent breeding groups of walleye (Stizostedion vitreum) in tributaries to western Lake Erie. J Great Lakes Res., 22(2) : 280-288.
Metzgar D,Bytof J,Wills C .2000 .Selection against frameshift mutations limits microsatellite expansion in coding DNA. , 10(1) : 72-80.
Moen T,Baranski M,Sonesson AK,Kjøglum S AK .2009 .Confirmation and fine-mapping of a major QTL for resistance to infectious pancreatic necrosis in Atlantic salmon (Salmo salar): populationlevel associations between markers and trait. BMC Genomics, 10(1) : 368.
Moen T,Sonesson AK,Hayes B,Lien S,Munck H,Meuwissen TH H .2007 .Mapping of a quantitative trait locus for resistance against infectious salmon anaemia in Atlantic salmon (Salmo salar): comparing survival analysis with analysis on affected/resistant data. BMC Genetics, 8(1) : 53.
Moghadam HK,Poissant J,Fotherby H,Haidle L,Ferguson MM,Danzmann RG .2007 .Quantitative trait loci for body weight, condition factor and age at sexual maturation in Arctic charr (Salvelinus alpinus): comparative analysis with rainbow trout (Oncorhynchus mykiss) and Atlantic salmon (Salmo salar). Mol Genet, 277(6) : 647-661.
Moran C .1993 .Microsatellite repeats in pig (Sus domestica) and chicken (Gallus domesticus) genomes. Journal of Heredity, 84(4) : 274-280.
Negrín-Báez D,Navarro A,Afonso JM,Ginés R,Zamorano MJ R .2015 .Detection of QTL associated with three skeletal deformities in gilthead seabream (Sparus aurata L.): Lordosis, vertebral fusion and jaw abnormality. , 448 : 123-127.
Ng SH,Artieri CG,Bosdet IE,Chiu R,Danzmann RG,Davidson WS,Ferguson MM,Fjell CD,Hoyheim B,Jones SJ .2005 .A physical map of the genome of Atlantic salmon, Salmo salar. , 86(4) : 396-404.
Nichols KM,Edo AF,Wheeler PA,Thorgaard GH .2008 .The genetic basis of smoltification-related traits in Oncorhynchus mykiss. , 179(3) : 1559-1575.
Nielsen EE,Hansen MM,Mensberg KL .1998 .Improved primer sequences for the mitochondrial ND1, ND3/4 and ND5/6 segments in salmonid fishes: application to RFLP analysis of Atlantic salmon. J Fish Biol, 53(1) : 216-220.
Norman JD,Danzmann RG,Glebe B,Ferguson MM .2011 .The genetic basis of salinity tolerance traits in Arctic charr (Salvelinus alpinus). BMC Genetics, 12(1) : 81.
Ohara E,Nishimura T,Nagakura Y,Sakamoto T,Mushiake K,Okamoto N K .2005 .Genetic linkage maps of two yellowtails (Seriola quinqueradiata and Seriola lalandi). Aquaculture., 244(1-4) : 41-48.
Okumuş İ,Çiftci Y .2003 .Fish population genetics and molecular markers: II-molecular markers and their applications in fisheries and aquaculture. Turk J Fish Aquat Sci., 3(1) : 51-79.
Palmiter RD,Brinster RL,Hammer RE,Trumbauer ME,Rosenfeld MG,Birnberg NC,Evans RM .1982 .Dramatic growth of mice that develop from eggs microinjected with metallothionein-growth hormone fusion genes. Nature, 300(5893) : 611-615.
Palti Y,Luo MC,Hu Y,Genet C,You FM,Thorgaard RL,Wheeler GH,Rexroad PA,CE PA .2009 .A first generation BACbased physical map of the rainbow trout genome. BMC Genomics, 10(1) : 462.
Parker PG,Snow AA,Schug MD,Booton GC,Fuerst PA .1998 .What molecules can tell us about populations: choosing andusing a molecular marker. , 79(2) : 361-382.
Parsons JE,Thorgaard GH .1985 .Production of androgenetic diploid rainbow trout. Journal of Heredity, 76(3) : 177-181.
Perry GM,Martyniuk CM,Ferguson MM,Danzmann RG .2005 .Genetic parameters for upper thermal tolerance and growth-related traits in rainbow trout (Oncorhynchus mykiss). Aquaculture., 250(1-2) : 120-128.
Provasi E,Genovese P,Lombardo A,Magnani Z,Liu PQ,Reik A,Chu V,Paschon DE,Zhang L,Kuball J,Camisa B .2012 .Editing T cell specificity towards leukemia by zinc finger nucleases and lentiviral gene transfer. Nat Med, 18(5) : 807-815.
Pruett CL,Saillant E,Gold JR .2005 .Historical population demography of red snapper (Lutjanus campechanus) from the northern Gulf of Mexico based on analysis of sequences of mitochondrial DNA. Mar Biol, 147(3) : 593-602.
Ravago RG,Monje VD,Juinio-Menez MA .2002 .Length and sequence variability in mitochondrial control region of the milkfish, Chanos chanos. Mar Biotechnol, 4(1) : 40-50.
Reid D,Szanto A,Glebe B,Danzmann R,Ferguson M .2005 .QTL for body weight and condition factor in Atlantic salmon (Salmo salar): comparative analysis with rainbow trout (Oncorhynchus mykiss) and Arctic charr (Salvelinus alpinus). Heredity., 94(2) : 166-172.
Rexroad CE,Vallejo RL,Liu S,Palti Y,Weber GM. .2013 .Quantitative Trait Loci Affecting Response to Crowding Stress in an F 2 Generation of Rainbow Trout Produced Through Phenotypic Selection. , 15(5) : 613-627.
Ruane J,Dargie JD,Daly C .2016 .. Proceedings of the FAO International Symposium on The Role of Agricultural Biotechnologies in Sustainable Food Systems and Nutrition. FAO., : .
Salem M,Rexroad CE,Wang J,Thorgaard GH,Yao J .2010 .Characterization of the rainbow trout transcriptome using Sanger and 454-pyrosequencing approaches. BMC Genomics, 11(1) : 564.
Sanger F,Nicklen S,Coulson AR .1977 .DNA sequencing with chain-terminating inhibitors. Proc Nat Acad Sci., 74(12) : 5463-5467.
Sarropoulou E,Franch R,Louro B,Power DM,Bargelloni L,Magoulas A,Senger F,Tsalavouta M,Patarnello T,Galibert F,Kotoulas G F .2007 .A gene-based radiation hybrid map of the gilthead sea bream Sparus aurata refines and exploits conserved synteny with Tetraodon nigroviridis. BMC Genomics, 8(1) : 1-14.
Sauvage C,Boudry P,De Koning DJ,Haley C,Heurtebise S,S S .2010 .QTL for resistance to summer mortality and OsHV‐1 load in the Pacific oyster (Crassostrea gigas). Anim Genet, 41(4) : 390-399.
Scheerer PD,Thorgaard GH,Allendorf FW,Knudsen KL .1986 .Androgenetic rainbow trout produced from inbred and outbred sperm sources show similar survival. , 57(1-4) : 289-298.
Schwartz DC,Li X,Hernandez LI,Ramnarain SP,Huff EJ,Wang YK .1993 .Ordered restriction maps of Saccharomyces cerevisiae chromosomes constructed by optical mapping. Science., 262(5130) : 110-114.
Serapion J,Kucuktas H,Feng J,Liu Z J .2004 .Bioinformatic mining of type I microsatellites from expressed sequence tags of channel catfish (Ictalurus punctatus). Mar Biotechnol, 6(4) : 364-377.
Shelton WL,Rodriguez-Guerrero D,Lopez-Macias J .1981 .Factors affecting androgen sex reversal of Tilapia aurea. , 25(1) : 59-65.
Soderlund C,Humphray S,Dunham A,French L A .2000 .7. and FPC V4, 10(11) : 1772-1787.
Southern EM .1975 .Detection of specific sequences among DNA fragments separated by gel electrophoresis. J Mol Biol, 98(3) : 503-517.
Star B,Nederbragt AJ,Jentoft S,Grimholt U,Malmstrøm M,Gregers TF,Rounge TB,Paulsen J,Solbakken MH,Sharma A,Wetten OF .2011 .The genome sequence of Atlantic cod reveals a unique immune system. Nature, 477(7363) : 207-210.
Sun L,Liu S,Wang R,Jiang Y,Zhang Y,Zhang J,Bao L,Kaltenboeck L,Dunham R,Waldbieser G,Liu Z G .2014 .Identification and analysis of genome-wide SNPs provide insight into signatures of selection and domestication in channel catfish (Ictalurus punctatus). PloS one., 9(10) : e109666.
Suwa M,Arai K,Suzuki R K .1994 .Suppression of the first cleavage and cytogenetic studies on the gynogenetic loach. Fish Sci., 60(6) : 673-681.
Taniguchi N,Yamasaki M,Takagi M,Tsujimura A .1996 .Genetic and environmental variances of body size and morphological traits in communally reared clonal lines from gynogenetic diploid ayu, Plecoglossus altivelis. , 140(4) : 333-341.
Tavares ES,Baker AJ .2008 .Single mitochondrial gene barcodes reliably identify sister-species in diverse clades of birds. BMC Evol Biol, 8(1) : 81.
Tóth G,Gáspári Z,Jurka J .2000 .Microsatellites in different eukaryotic genomes: survey and analysis. Genome Research, 10(7) : 967-981.
Townsend JA,Wright DA,Winfrey RJ,Fu F,Maeder ML,Joung JK,Voytas DF JK .2009 .High-frequency modification of plant genes using engineered zinc-finger nucleases. Nature, 459(7245) : 442-445.
Tsigenopoulos CS,Louro B,Chatziplis D,Lagnel J,Vogiatzi E,Loukovitis D,Franch R,Sarropoulou E,Power DM,Patarnello T,Mylonas CC .2014 .Second generation genetic linkage map for the gilthead sea bream Sparus aurata L. Mar Genomics. , 18 : 77-82.
Ueda T,Sato R,Kobayashi J .1988 .Triploid rainbow trout [Salmo gairdneri] induced by high-pH high-calcium. Bulletin of the Japanese Society of Scientific Fisheries., : .
Vallejo RL,Palti Y,Liu S,Marancik DP,Wiens GD .2014 .Validation of linked QTL for bacterial cold water disease resistance and spleen size on rainbow trout chromosome Omy19. , 432 : 139-143.
Waldbieser GC,Bosworth BG,Quiniou SM .2010 .Production of viable homozygous, doubled haploid channel catfish (Ictalurus punctatus). Mar Biotechnol, 12(4) : 380-385.
Waldbieser GC,Lelania BA,Nonneman DJ BA .2003 .Complete sequence and characterization of the channel catfish mitochondrial genome. DNA Sequence, 14(4) : 265-277.
Walter MA,Spillett DJ,Thomas P,Weissenbach J,Goodfellow PN .1994 .A method for constructing radiation hybrid maps of whole genomes. Nat Genet, 7(1) : 22-28.
Wang CM,Bai ZY,He XP,Lin G,Xia JH,Sun F,Lo LC,Feng F,Zhu ZY,Yue GH .2011 .A high-resolution linkage map for comparative genome analysis and QTL fine mapping in Asian seabass, Lates calcarifer. BMC Genomics, 12(1) : 174.
Wang L,Fan C,Liu Y,Zhang Y,Liu S,Sun D,Deng H,Xu Y,Tian Y,Liao X,Xie M .2014 .A genome scan for quantitative trait loci associated with Vibrio anguillarum infection resistance in Japanese flounder (Paralichthys olivaceus) by bulked segregant analysis. Mar Biotechnol, 16(5) : 513-521.
McClelland Welsh J,M Welsh J .1990 .Fingerprinting genomes using PCR with arbitrary primers. Nucleic Acids Res, 18(24) : 7213-7218.
Williams JG,Kubelik AR,Livak KJ,Rafalski JA,Tingey SV .1990 .DNA polymorphisms amplified by arbitrary primers are useful as genetic markers. Nucleic Acids Res, 18(22) : 6531-6535.
Wirgin I,Maceda L I .1991 .Development and use of striped bass‐specific RFLP probes. J Fish Biol, 39 : 159-167.
Wong EHK,Hanner RH .2008 .DNA barcoding detects market substitution in North American seafood. Food Res Int., 41(8) : 828-837.
Wong LL,Peatman E,Lu J,Kucuktas H,He S,Zhou C,Na-Nakron U .2011 .DNA barcoding of catfish: species authentication and phylogenetic assessment. PLoS One, 6(3) : e17812.
Wringe BF,Devlin RH,Ferguson MM,Moghadam HK,Sakhrani D,Danzmann RG .2010 .Growthrelated quantitative trait loci in domestic and wild rainbow trout (Oncorhynchus mykiss). BMC Genet, 11(1) : 1-14.
Xia JH,Lin G,He X,Yunping B,Liu P,Liu F,Sun F,Tu R,Yue GH .2014 .Mapping quantitative trait loci for omega-3 fatty acids in Asian seabass. Mar Biotechnol, 16(1) : 1-9.
Xu J,Ji P,Zhao Z,Zhang Y,Feng J,Wang J,Li J,Zhang X,Zhao L,Liu G,Xu P .2012 .Genome-wide SNP discovery from transcriptome of four common carp strains. PloS one., 7(10) : e48140.
Xu P,Wang J,Wang J,Cui R,Li Y,Zhao Z,Ji P,Zhang Y,Li J,Sun X .2011 .Generation of the first BAC-based physical map of the common carp genome. BMC Genomics, 12(1) : 537.
Xu P,Wang S,Liu L,Thorsen J,Kucuktas H,Liu Z H .2007 .A BAC-based physical map of the channel catfish genome. , 90(3) : 380-388.
Yamamoto E .1999 .Studies on sexmanipulation and production of cloned populations in hirame, Paralichthys olivaceus (Temminck et Schlegel). Aquaculture., 173(1- 4) : 235-246.
Yamazaki F .1983 .Sex control and manipulation in fish. , 33(1-4) : 329-354.
Yáñez JM,Naswa S,López M,Bassini L,Correa K,Gilbey J,Bernatchez L,Norris A,Neira R,Lhorente JP,Schnable PS .2016 .Genomewide single nucleotide polymorphism discovery in Atlantic salmon (Salmo salar): validation in wild and farmed American and European populations. Mol Ecol Resour, 16(4) : 1002-1011.
Ye H,Liu Y,Liu X,Wang X,Wang Z X .2014 .Genetic mapping and QTL analysis of growth traits in the large yellow croaker Larimichthys crocea. Mar Biotechnol, 16(6) : 729-738.
Yu Z and Guo X .2006 .Identification and mapping of disease-resistance QTLs in the eastern oyster, Crassostrea virginica Gmelin. , 254(1-4) : 160-170.
Zhang X,Zhang Y,Zheng X,Kuang Y,Zhao Z,Zhao L,Li C,Jiang L,Cao D,Lu C,Xu P C .2013 .A consensus linkage map provides insights on genome character and evolution in common carp (Cyprinus carpio L.). Mar Biotechnol, 15(3) : 275-312.
Zhu Z,He L,Chen S L .1758 .Novel gene transfer into the fertilized eggs of gold fish (Carassius auratus L.. J Appl Ichthyol, 1(1) : 31-34.
0

Citations

0

Downloads

4

Views