Matlab-based sequence analysis of murdr1h, a functionally characterized resistance gene of roses. | [Proceedings of Pakistan Academy of Sciences • 2012]

Author(s):

1. Aneela Yasmin: Department of Biotechnology, Faculty of Crop Production, Sindh Agriculture University, Tandojam-70060, Pakistan

2. Akhtar A. Jalbani: Information Technology Center, Sindh Agriculture University, Tandojam-70060, Pakistan

3. Abdul Samad Chandio: Department of Irrigation and Drainage, Faculty of Agricultural Engineering, Sindh Agriculture University, Tandojam-70060, Pakistan

Abstract:

One of the practical applications of Bioinformatics is sequence analysis through sequence softwares available for the biological sequence alignment; in this paper some basic alignment algorithms are discussed and implemented in MATLAB Bioinformatics tool box. Two sequences analyzed by this tool box were muRdr1H and resistance protein of Populus trichocarpa (ACCESSION XP_002329162). muRdr1H is a functionally characterized member of Rdr1 resistance gene family of roses, active against black spot. The global sequence alignment. Our proposed work provides useful application of MATLAB which can help in interpretation and visualization of the data in molecular biology.

Page(s): 251-257

DOI: DOI not available

Published: Journal: Proceedings of Pakistan Academy of Sciences, Volume: 49, Issue: 4, Year: 2012

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