Pakistan Science Abstracts
Article details & metrics
No Detail Found!!
Transcriptome Analysis of Pinellia integrifolia and PEBP Genes Identification in Related Species
Author(s):
1. Dan Liu: Department of Life Science, Guizhou University, Guiyang, 550025, China
2. Rui Luo: Department of Life Science, Guizhou University, Guiyang, 550025, China
3. Haili Chen: Department of Life Science, Guizhou University, Guiyang, 550025, China
4. Huaxia Gao: Department of Life Science, Guizhou University, Guiyang, 550025, China
5. Lisha Xia: Department of Life Science, Guizhou University, Guiyang, 550025, China
Abstract:
The transcriptome analysis of Pinella integrifolia was carried out in this study to study its bulbil development at molecular level. Approximately 44.12 Mb high-quality clean reads were generated, and 74,550 unigenes that possess an average length of 831 bp were assembled de novo. A total of 44,626 unigenes (59.86%) were annotated in the database, 40,900 unigenes had blasted to the Nr database, and 6,112 and 16,797 unigenes had similar hits in the Gene Ontology (GO) and Cluster of Orthologous Groups (COG) databases, respectively. Results revealed that 31,851 unigenes were assigned to 135 KEGG pathways. Based on transcriptomic data, various members of PEBP gene family were identified in P. integrifolia, A. bulbifer, P. ternata and Colocasia esculenta. These data could be utilized in further research such as explorations of bulbil development in Pinellia.
Page(s): 975-980
Published: Journal: International Journal of Agriculture and Biology, Volume: 20, Issue: 5, Year: 2018
Keywords:
Keywords are not available for this article.
References:
[1] Abraham-Juarez , M.J.,A.Martinez-Hernandez,M.A.Leyva-Gonzalez,L.Herrera-Estrella,J.Simpson, 2010.Class I KNOX genes are associated with organogenesis during bulbil formation in Agave tequilana,J. Exp. Bot. 61 4055 -4067
[2] Conesa , A,S.Gotz,J.M.Garcia-Gomez,J.Terol,M.Talon,M.Robles, 2005.Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research, 21 3674 -3676
[3] Carmona , M.L.,M.Calonje,J.M.Martine-Zapater, 2007.The FT/TFL1 gene family in grapevine,Plant Mol. Biol 63 637 -650
[4] Davis , A.R.,H.J.Choi,J.H.Cota-Sánchez, 2011.Comparative floral structure of four New World Allium (Amaryllidaceae) species, 36 870 -882
[5] Diao , Y.,C.Z.Yang,M.Yan,X.F.Zhang,Y.W.Wang,Z.L.Hu, 2014.De Novo transcriptome and small RNA analyses of two Amorphophallus species,PloS One 9 e95428 -
[6] Gao , X.Y.,Y.Y.Wang, 2003.Practical Techniques for Plant Asexual Propagation, -
[7] González-Schain , N.D.,M.Díaz-Mendoza,M.Zurczak, 2012.Potato CONSTANS is involved in photoperiodic tuberizationin a graft-transmissible manner,Plant 70 678 -690
[8] Grabherr , M.G.,B.J.Haas,M.Yassour,J.Z.Levin,D.A.Thompson,I.Amit,X.Adiconis,L.Fan,R.Raychowdhury,Q.D.Zeng,Z.H.Chen,E.Maucell,N.Hacohen,A.Gnirke,N.Rhind,F.D.Palma,B.W.Birren,C.Nusbaum,K.Lindblad-Toh,N.Firedman,A.Regev, 2011.Trinity: reconstructing a full-length transcriptome without a genome from RNA-Seq data,Nat. Biotechnol 29 644 -652
[9] Huang , X.,Y.Jing,H.Chen,D.J.Liu,B.Y.Yang,M.Li, 2016.Wholetranscriptome sequencing of Pinellia ternata using the Illumina platform,Mol. Res 15 1 -14
[10] Igasaki , T.,Y.Watanabe,M.Nishiguchi,N.Kotoda, 2008.The FLOWERING LOCUS T/TERMINAL FLOWER 1 Family in Lombarby Poplar. Plant Cell Physiol, 3 291 -300
[11] Jiang , L.C.,B.W.Pan,G.S.Li,W.Y.Mao,Y.M.Peng, 1996.Relationship between tuber size and location of bulbil in petiole of Pinellia ternata,Chin. J. Chin. Mater. Med 21 4 -
[12] Kanehisa , M., S.,Goto , M.,Hattori , K.F.,Aoki-Kinoshita , M.,Itoh , S.,Kawashima , T.,Katayama , M.,Araki and M.,Hirakawa, 2006.From genomics to chemical genomics: new developments in KEGG,Nucl. Acids Res 34 354 -357
[13] Kinoshita , T.,N.Ono,Y.Hayashi,S.Morimoto,S.Nakamura,M.Soda,Y.Kato,M.Ohnis,T.Nakano,S.I.Inoue,K.I. Shimazakl,FLOWERING LOCUS T Regulates Stomatal, 2011.Opening,Curr. Biol 14 1232 -1238
[14] Li , C.,Y.N.Zhang,K.Zhang,D.Guo,X.Y.Wang,X.Z.Huang, .Promoting flowering, lateral shoot outgrowth, leaf development, and flower abscission in tobacco plants overexpressing cotton FLOWERINGLOCUS T (FT)-like gene Gh FT1, 6 454 -
[15] Li , C.Q.,L.Luo,L.Niu,Z.F.Xu, .Identification and characterization of the FT/TFL1 gene family in the biofuel plant Jatropha curcas,Plant Mol. Biol. Rep 33 326 -333
[16] Li , H.,G.H.Zhu,P.C.Boyce,J.Murata,W.L.A.Hetterscheid,J.Bogner,N.Jacobsen,P.H.,L.B.Zhang,I.A . Al-Shehbaz,N.J.Turland,G.H.Zhu, 2010., 3 -79
[17] Li , M.W.,D.X.Gu,Y.L.Liu, 1997.Several variation patterns and their evolution of Pinellia,J. Wuhan Bot. Res. 15 317 -322
[18] Li , T.,S.Q.Li,R.Luo, 2012.Morphological observation and anatomical study on bulbil development of Lilium sulphureum,Acta Bot. Boreal-Occident. Sin. 32 0085 -0089
[19] Lee , R., S.,Baldwin , F.,Kenel , J. McCallum,R.Macknight, 2013.FLOWERING LOCUS T genes control onion bulb formation and flowering,Nat. Commun 4 2884 -
[20] Liu , L.Y., S.,Farrona , S.,Klemme and F.K.,Turck, 2014.Post-fertilization expression of FLOWERING LOCUS T suppresses reproductive reversion,Front. Plant Sci. 5 164 -
[21] Liu , W.X.,C.H.Xiong,L.F.Yan,Z.S.Zhang,Y.R.Wang,Y.J.Liu,Z.P.Liu, 2017.Transcriptome analyses reveal candidate genes potentially involved in Al stress response in Alfalfa, 8 26 -
[22] Luo , R.,Y.S.Du,Y.Y.Sun,Z.J.Cao, 2014.Morphological observation and anatomical study on bulbil development of Pinellia ternata,Acta Bot 34 1776 -1781
[23] Meng , J.L., 1995., -
[24] Pan , B.W., 1998.The Ecological Observation of bulbil in Pinellia ternata,Chin. J. Chin. Mater. Med 9 526 -527
[25] Quevillon , E.,V.Silventoinen,S.Pillai,N.Harte,N.Mulder,R.Apweiler,R.Lopez, 2005.InterProScan: protein domains identifier,Nucl. Acids Res 33 116 -120
[26] Sandoval,C.D. , M.J.A.,Juárez and J.,Simpson, 2012.Agave tequilana MADS genes show novel expression patterns in meristems, developing bulbils and floral organs,Sex Plant 25 11 -26
[27] Song , J.Y.,X.J.Ma,X.W.Li,S.Y.Jiang,T.Li,Z.M.Ding,Y.C.Luo, 2005.Dynamics and affecting factors of bulbil germination in Pinellia ternata,Chin. Trad. Herb. Drugs 36 740 -743
[28] Tae , K.H.,J.J.Kim, 2005.Pinellia koreana (Araceae), a New Species from Korea, 15 484 -487
[29] Tatusov , R.L.,E.V.Koonin,D.J.Lipman, 1997.A genomic perspective on protein families,Science 5338 631 -637
[30] Wang , C.N.,Q.C.B. Cronk, 2003.Meristem fate and bulbil formation in Titanotrichum (Gesneriaceae),Amer. J. Bot. 90 1696 -1707
[31] Wang , C.N.,M.Möller,Q.C.B.Cronk, 2004.Altered expression of GFLO, the Gesneriaceae homologue of Floricaula/Leafy, is associated with the transition to bulbil formation in Titanotrichum oldhamii, 214 122 -127
[32] Wang , D.K., 1986.The Ecological Observation of bulbil in Pinellia ternata,J. Chin. Med 1 5 -7
[33] Wickland , D.P.,Y.Hanzawa, 2015.The FLOWERING LOCUS T/TERMINAL FLOWER 1 Gene Family: Functional Evolution and Molecular Mechanisms,Mol. Plant 7 983 -997
[34] Xie , D.R.,P.J.Yang,X.Z.Cao,P.Y.Zhang, 1993.Discussion on the development and morphological nature of bulbil of Dioscorea opposita Thunb,Acta Univ. Agric 21 76 -82
[35] Ye , J.,L.Fang,H.Zheng,J.Chen,Z.J.Zhang,J.Wang,S.T.Li,R.Q.Li,L.Bolund,J.Wang, 2006.WEGO: a web tool for plotting GO annotations,Nucl. Acids Res 34 293 -297
[36] Zhang , G.H.,N.H.Jiang,W.L.Song,C.H.Ma,S.C.Yang,J.W.Chen, 2016.Transcriptome Analysis of Pinellia ternata Identify the Candidate Genes Involved in the Biosynthesis of Benzoic Acid and Ephedrine, 7 1209 -
[37] Zhou , W.,Q.Huang,X.Wu,Z.W.Zhou,M.Q.Ding,F.F.Huang,S.Li,Y.Wang,G.Y.Kai, 2017.Comprehensive transcriptome profiling of Salvia miltiorrhiza for discovery of genes associated with the biosynthesis of tanshinones and phenolic acids,Sci. Rep 7 10554 -
Citations
Citations are not available for this document.
0

Citations

0

Downloads

13

Views